HL_6VWL_026

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

6VWL|1|1|U|1168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWL_026 not in the Motif Atlas

Homologous match to HL_5J7L_026

Geometric discrepancy: 0.3921

The information below is about HL_5J7L_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_93535.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6VWL|1|1|U|1165
6VWL|1|1|G|1166
6VWL|1|1|A|1167
6VWL|1|1|U|1168
6VWL|1|1|A|1169
6VWL|1|1|A|1170
6VWL|1|1|A|1171

Current chains

Chain 1

16S ribosomal RNA

Nearby chains

Chain a

30S ribosomal protein S2

Chain t

30S ribosomal protein S21