HL_6VWL_029

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUCAGAAUGC

Length

11 nucleotides

Bulged bases

6VWL|1|1|U|1364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWL_029 not in the Motif Atlas

Homologous match to HL_4LFB_030

Geometric discrepancy: 0.1732

The information below is about HL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86432.1

Basepair signature

cWW-tWH-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

6VWL|1|1|G|1356
6VWL|1|1|A|1357
6VWL|1|1|U|1358
6VWL|1|1|C|1359
6VWL|1|1|A|1360
6VWL|1|1|G|1361
6VWL|1|1|A|1362
6VWL|1|1|A|1363
6VWL|1|1|U|1364
6VWL|1|1|G|1365
6VWL|1|1|C|1366

Current chains

Chain 1

16S ribosomal RNA

Nearby chains

Chain h

30S ribosomal protein S9

Chain i

30S ribosomal protein S10

Chain m

30S ribosomal protein S14