HL_6VWL_035

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

6VWL|1|2|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWL_035 not in the Motif Atlas

Geometric match to HL_6CK5_001

Geometric discrepancy: 0.2251

The information below is about HL_6CK5_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6VWL|1|2|U|137
6VWL|1|2|U|138
6VWL|1|2|U|139
6VWL|1|2|C|140
6VWL|1|2|G|141
6VWL|1|2|A|142

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L23