HL_6VWL_052

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUCGAAAAA

Length

10 nucleotides

Bulged bases

6VWL|1|2|C|747, 6VWL|1|2|A|751, 6VWL|1|2|A|752

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWL_052 not in the Motif Atlas

Homologous match to HL_4WF9_023

Geometric discrepancy: 0.1111

The information below is about HL_4WF9_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.1

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

11

Unit IDs

6VWL|1|2|U|744
6VWL|1|2|G|745
6VWL|1|2|U|746
6VWL|1|2|C|747
6VWL|1|2|G|748
6VWL|1|2|A|749
6VWL|1|2|A|750
6VWL|1|2|A|751
6VWL|1|2|A|752
6VWL|1|2|A|753

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain AA

50S ribosomal protein L34

Chain B

50S ribosomal protein L3

Chain Q

50S ribosomal protein L22

Chain Y

50S ribosomal protein L32