3D structure

PDB id
6VWL (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UGUCGAAAAA
Length
10 nucleotides
Bulged bases
6VWL|1|2|C|747, 6VWL|1|2|A|751, 6VWL|1|2|A|752
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6VWL_052 not in the Motif Atlas
Homologous match to HL_4WF9_023
Geometric discrepancy: 0.1111
The information below is about HL_4WF9_023
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_88205.2
Basepair signature
cWW-cWS-tSW-F-F
Number of instances in this motif group
7

Unit IDs

6VWL|1|2|U|744
6VWL|1|2|G|745
6VWL|1|2|U|746
6VWL|1|2|C|747
6VWL|1|2|G|748
6VWL|1|2|A|749
6VWL|1|2|A|750
6VWL|1|2|A|751
6VWL|1|2|A|752
6VWL|1|2|A|753

Current chains

Chain 2
23S ribosomal RNA

Nearby chains

Chain AA
50S ribosomal protein L34
Chain B
50S ribosomal protein L3
Chain Q
50S ribosomal protein L22
Chain Y
50S ribosomal protein L32

Coloring options:


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