3D structure

PDB id
6VWL (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UGCUAACG
Length
8 nucleotides
Bulged bases
6VWL|1|2|U|958, 6VWL|1|2|C|961
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6VWL_056 not in the Motif Atlas
Homologous match to HL_7A0S_026
Geometric discrepancy: 0.2005
The information below is about HL_7A0S_026
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

6VWL|1|2|U|955
6VWL|1|2|G|956
6VWL|1|2|C|957
6VWL|1|2|U|958
6VWL|1|2|A|959
6VWL|1|2|A|960
6VWL|1|2|C|961
6VWL|1|2|G|962

Current chains

Chain 2
23S ribosomal RNA

Nearby chains

Chain 3
5S ribosomal RNA; 5S rRNA
Chain K
50S ribosomal protein L16

Coloring options:


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