HL_6VWL_064

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

6VWL|1|2|A|1392, 6VWL|1|2|U|1396, 6VWL|1|2|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWL_064 not in the Motif Atlas

Homologous match to HL_4WF9_035

Geometric discrepancy: 0.2641

The information below is about HL_4WF9_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6VWL|1|2|G|1389
6VWL|1|2|U|1390
6VWL|1|2|U|1391
6VWL|1|2|A|1392
6VWL|1|2|A|1393
6VWL|1|2|U|1394
6VWL|1|2|A|1395
6VWL|1|2|U|1396
6VWL|1|2|U|1397
6VWL|1|2|C|1398

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L23