HL_6VWL_065

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VWL|1|2|C|1451
6VWL|1|2|G|1452
6VWL|1|2|A|1453
6VWL|1|2|C|1454
6VWL|1|2|G|1455
6VWL|1|2|G|1456
6VWL|1|2|U|1457
6VWL|1|2|U|1458
6VWL|1|2|G|1459

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L17