HL_6VWL_084

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWL_084 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.3258

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6VWL|1|2|G|2303
6VWL|1|2|G|2304
6VWL|1|2|U|2305
6VWL|1|2|C|2306
6VWL|1|2|G|2307
6VWL|1|2|G|2308
6VWL|1|2|A|2309
6VWL|1|2|C|2310
6VWL|1|2|A|2311
6VWL|1|2|U|2312
6VWL|1|2|C|2313

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L5