HL_6VWL_102

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

6VWL|1|5|C|17, 6VWL|1|5|A|21

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWL_102 not in the Motif Atlas

Homologous match to HL_2AKE_001

Geometric discrepancy: 0.5302

The information below is about HL_2AKE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27981.1

Basepair signature

cWW-cWS

Number of instances in this motif group

2

Unit IDs

6VWL|1|5|C|13
6VWL|1|5|A|14
6VWL|1|5|G|15
6VWL|1|5|U|16
6VWL|1|5|C|17
6VWL|1|5|G|18
6VWL|1|5|G|19
6VWL|1|5|U|20
6VWL|1|5|A|21
6VWL|1|5|G|22

Current chains

Chain 5

tRNAPhe

Nearby chains

Chain 2

Large subunit ribosomal RNA; LSU rRNA