HL_6VWL_104
3D structure
- PDB id
- 6VWL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUUCGAUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6VWL_104 not in the Motif Atlas
- Homologous match to HL_5E6M_003
- Geometric discrepancy: 0.5719
- The information below is about HL_5E6M_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.2
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
6VWL|1|5|G|53
6VWL|1|5|U|54
6VWL|1|5|U|55
6VWL|1|5|C|56
6VWL|1|5|G|57
6VWL|1|5|A|58
6VWL|1|5|U|59
6VWL|1|5|U|60
6VWL|1|5|C|61
Current chains
- Chain 5
- tRNAPhe
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: