HL_6VWM_001
3D structure
- PDB id
- 6VWM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UUUGAUCAUGG
- Length
- 11 nucleotides
- Bulged bases
- 6VWM|1|1|U|14
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6VWM_001 not in the Motif Atlas
- Homologous match to HL_4LFB_001
- Geometric discrepancy: 0.1202
- The information below is about HL_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_73535.1
- Basepair signature
- cWW-tHW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6VWM|1|1|U|12
6VWM|1|1|U|13
6VWM|1|1|U|14
6VWM|1|1|G|15
6VWM|1|1|A|16
6VWM|1|1|U|17
6VWM|1|1|C|18
6VWM|1|1|A|19
6VWM|1|1|U|20
6VWM|1|1|G|21
6VWM|1|1|G|22
Current chains
- Chain 1
- 16S ribosomal RNA
Nearby chains
- Chain d
- 30S ribosomal protein S5
- Chain k
- 30S ribosomal protein S12
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