HL_6VWM_011

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

6VWM|1|1|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWM_011 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.3639

The information below is about HL_5J7L_012

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6VWM|1|1|G|462
6VWM|1|1|U|463
6VWM|1|1|U|464
6VWM|1|1|A|465
6VWM|1|1|A|466
6VWM|1|1|U|467
6VWM|1|1|A|468
6VWM|1|1|C|469
6VWM|1|1|C|470

Current chains

Chain 1

16S ribosomal RNA

Nearby chains