HL_6VWM_027
3D structure
- PDB id
- 6VWM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CUGCAACUCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6VWM_027 not in the Motif Atlas
- Homologous match to HL_4LFB_029
- Geometric discrepancy: 0.2144
- The information below is about HL_4LFB_029
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_02887.3
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6VWM|1|1|C|1314
6VWM|1|1|U|1315
6VWM|1|1|G|1316
6VWM|1|1|C|1317
6VWM|1|1|A|1318
6VWM|1|1|A|1319
6VWM|1|1|C|1320
6VWM|1|1|U|1321
6VWM|1|1|C|1322
6VWM|1|1|G|1323
Current chains
- Chain 1
- 16S ribosomal RNA
Nearby chains
- Chain l
- 30S ribosomal protein S13
- Chain m
- 30S ribosomal protein S14
- Chain r
- 30S ribosomal protein S19
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