HL_6VWM_046
3D structure
- PDB id
- 6VWM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UUUUGUAUAA
- Length
- 10 nucleotides
- Bulged bases
- 6VWM|1|2|A|574
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6VWM_046 not in the Motif Atlas
- Homologous match to HL_5J7L_150
- Geometric discrepancy: 0.1631
- The information below is about HL_5J7L_150
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
6VWM|1|2|U|566
6VWM|1|2|U|567
6VWM|1|2|U|568
6VWM|1|2|U|569
6VWM|1|2|G|570
6VWM|1|2|U|571
6VWM|1|2|A|572
6VWM|1|2|U|573
6VWM|1|2|A|574
6VWM|1|2|A|575
Current chains
- Chain 2
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3
- Chain J
- 50S ribosomal protein L15
- Chain O
- 50S ribosomal protein L20
- Chain P
- 50S ribosomal protein L21
- Chain Y
- 50S ribosomal protein L32
Coloring options: