HL_6VWM_062

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

6VWM|1|2|U|1396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWM_062 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.1925

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6VWM|1|2|G|1389
6VWM|1|2|U|1390
6VWM|1|2|U|1391
6VWM|1|2|A|1392
6VWM|1|2|A|1393
6VWM|1|2|U|1394
6VWM|1|2|A|1395
6VWM|1|2|U|1396
6VWM|1|2|U|1397
6VWM|1|2|C|1398

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L23