HL_6VWM_087

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

6VWM|1|2|U|2473

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWM_087 not in the Motif Atlas

Homologous match to HL_5J7L_193

Geometric discrepancy: 0.3149

The information below is about HL_5J7L_193

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6VWM|1|2|A|2471
6VWM|1|2|G|2472
6VWM|1|2|U|2473
6VWM|1|2|U|2474
6VWM|1|2|C|2475
6VWM|1|2|A|2476
6VWM|1|2|U|2477
6VWM|1|2|A|2478
6VWM|1|2|U|2479

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L36

Chain E

50S ribosomal protein L6

Chain K

50S ribosomal protein L16