HL_6VWM_102

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUCGAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWM_102 not in the Motif Atlas

Homologous match to HL_4YYE_003

Geometric discrepancy: 0.2427

The information below is about HL_4YYE_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6VWM|1|5|G|53
6VWM|1|5|U|54
6VWM|1|5|U|55
6VWM|1|5|C|56
6VWM|1|5|G|57
6VWM|1|5|A|58
6VWM|1|5|U|59
6VWM|1|5|U|60
6VWM|1|5|C|61

Current chains

Chain 5

tRNAPhe

Nearby chains

Chain D

50S ribosomal protein L5

Chain Z

50S ribosomal protein L33