HL_6VYQ_018

3D structure

PDB id

6VYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 15 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

6VYQ|1|D|U|467

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VYQ_018 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.1249

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6VYQ|1|D|G|462
6VYQ|1|D|U|463
6VYQ|1|D|U|464
6VYQ|1|D|A|465
6VYQ|1|D|A|466
6VYQ|1|D|U|467
6VYQ|1|D|A|468
6VYQ|1|D|C|469
6VYQ|1|D|C|470

Current chains

Chain D

16S rRNA

Nearby chains