HL_6VYR_034

3D structure

PDB id

6VYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 18 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VYR_034 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.0728

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_93658.1

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6VYR|1|D|C|1314
6VYR|1|D|U|1315
6VYR|1|D|G|1316
6VYR|1|D|C|1317
6VYR|1|D|A|1318
6VYR|1|D|A|1319
6VYR|1|D|C|1320
6VYR|1|D|U|1321
6VYR|1|D|C|1322
6VYR|1|D|G|1323

Current chains

Chain D

16S rRNA

Nearby chains

Chain S

30S ribosomal protein S14

Chain W

30S ribosomal protein S19

Chain X

30S ribosomal protein S13