HL_6VYR_046

3D structure

PDB id

6VYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 18 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

6VYR|1|a|A|311

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VYR_046 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.0891

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

6VYR|1|a|C|305
6VYR|1|a|U|306
6VYR|1|a|G|307
6VYR|1|a|G|308
6VYR|1|a|A|309
6VYR|1|a|A|310
6VYR|1|a|A|311
6VYR|1|a|G|312

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L24