HL_6VYR_103

3D structure

PDB id

6VYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 18 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6VYR|1|a|G|2751, 6VYR|1|a|C|2755

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VYR_103 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.1115

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.3

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

11

Unit IDs

6VYR|1|a|C|2745
6VYR|1|a|U|2746
6VYR|1|a|G|2747
6VYR|1|a|A|2748
6VYR|1|a|A|2749
6VYR|1|a|A|2750
6VYR|1|a|G|2751
6VYR|1|a|C|2752
6VYR|1|a|A|2753
6VYR|1|a|U|2754
6VYR|1|a|C|2755
6VYR|1|a|U|2756
6VYR|1|a|A|2757
6VYR|1|a|A|2758
6VYR|1|a|G|2759

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L6

Chain q

50S ribosomal protein L36

Chain s

50S ribosomal protein L13