HL_6VYR_105

3D structure

PDB id

6VYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 18 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

6VYR|1|a|A|2820

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VYR_105 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.0655

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6VYR|1|a|G|2819
6VYR|1|a|A|2820
6VYR|1|a|A|2821
6VYR|1|a|G|2822
6VYR|1|a|A|2823
6VYR|1|a|C|2824
6VYR|1|a|G|2825
6VYR|1|a|A|2826
6VYR|1|a|C|2827

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain w

50S ribosomal protein L17