HL_6VYS_011
3D structure
- PDB id
- 6VYS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex A1 (TTC-A1) containing a 21 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CUUCGG
- Length
- 6 nucleotides
- Bulged bases
- 6VYS|1|D|U|209
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6VYS_011 not in the Motif Atlas
- Homologous match to HL_5J7L_005
- Geometric discrepancy: 0.3428
- The information below is about HL_5J7L_005
- Detailed Annotation
- UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_34617.5
- Basepair signature
- cWW-tSW-F
- Number of instances in this motif group
- 57
Unit IDs
6VYS|1|D|C|207
6VYS|1|D|U|208
6VYS|1|D|U|209
6VYS|1|D|C|210
6VYS|1|D|G|211
6VYS|1|D|G|212
Current chains
- Chain D
- 16S rRNA
Nearby chains
No other chains within 10ÅColoring options: