HL_6VYS_019

3D structure

PDB id

6VYS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing a 21 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCAGCCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VYS_019 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.2009

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6VYS|1|D|G|521
6VYS|1|D|C|522
6VYS|1|D|A|523
6VYS|1|D|G|524
6VYS|1|D|C|525
6VYS|1|D|C|526
6VYS|1|D|C|528

Current chains

Chain D

16S rRNA

Nearby chains

Chain 7

mRNA with 21 nt long spacer

Chain R

30S ribosomal protein S12