3D structure

PDB id
6VYS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex A1 (TTC-A1) containing a 21 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GGGC
Length
4 nucleotides
Bulged bases
6VYS|1|D|G|1517
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6VYS_037 not in the Motif Atlas
Homologous match to HL_4LFB_032
Geometric discrepancy: 0.1665
The information below is about HL_4LFB_032
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.7
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
349

Unit IDs

6VYS|1|D|G|1515
6VYS|1|D|G|1516
6VYS|1|D|G|1517
6VYS|1|D|C|1520

Current chains

Chain D
16S rRNA

Nearby chains

Chain a
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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