HL_6VYS_087

3D structure

PDB id

6VYS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing a 21 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUGAGAUGC

Length

9 nucleotides

Bulged bases

6VYS|1|a|A|2031, 6VYS|1|a|G|2032

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VYS_087 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1105

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

8

Unit IDs

6VYS|1|a|G|2027
6VYS|1|a|U|2028
6VYS|1|a|G|2029
6VYS|1|a|A|2031
6VYS|1|a|G|2032
6VYS|1|a|A|2033
6VYS|1|a|U|2034
6VYS|1|a|G|2035
6VYS|1|a|C|2036

Current chains

Chain a

23S rRNA

Nearby chains

Chain i

50S ribosomal protein L32

Chain j

50S ribosomal protein L3