HL_6VYS_105

3D structure

PDB id

6VYS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing a 21 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

6VYS|1|a|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VYS_105 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.0656

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6VYS|1|a|G|2819
6VYS|1|a|A|2820
6VYS|1|a|A|2821
6VYS|1|a|G|2822
6VYS|1|a|A|2823
6VYS|1|a|C|2824
6VYS|1|a|G|2825
6VYS|1|a|A|2826
6VYS|1|a|C|2827

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain w

50S ribosomal protein L17