HL_6VZ2_046

3D structure

PDB id

6VZ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D1 (TTC-D1) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

6VZ2|1|a|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VZ2_046 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.0889

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

6VZ2|1|a|C|305
6VZ2|1|a|U|306
6VZ2|1|a|G|307
6VZ2|1|a|G|308
6VZ2|1|a|A|309
6VZ2|1|a|A|310
6VZ2|1|a|A|311
6VZ2|1|a|G|312

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L24