HL_6VZJ_006
3D structure
- PDB id
- 6VZJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- GUUCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- 6VZJ|1|B|C|56, 6VZJ|1|B|A|57
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6VZJ_006 not in the Motif Atlas
- Homologous match to HL_5HR6_003
- Geometric discrepancy: 0.3905
- The information below is about HL_5HR6_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 96
Unit IDs
6VZJ|1|B|G|53
6VZJ|1|B|U|54
6VZJ|1|B|U|55
6VZJ|1|B|C|56
6VZJ|1|B|A|57
6VZJ|1|B|A|58
6VZJ|1|B|A|59
6VZJ|1|B|U|60
6VZJ|1|B|C|61
Current chains
- Chain B
- E-site and P-site tRNA (fMet)
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain n
- 50S ribosomal protein L5
Coloring options: