HL_6VZJ_043

3D structure

PDB id

6VZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

6VZJ|1|a|A|196

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VZJ_043 not in the Motif Atlas

Homologous match to HL_5J7L_139

Geometric discrepancy: 0.0634

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6VZJ|1|a|G|194
6VZJ|1|a|A|195
6VZJ|1|a|A|196
6VZJ|1|a|A|197
6VZJ|1|a|C|198
6VZJ|1|a|A|199
6VZJ|1|a|U|200
6VZJ|1|a|C|201

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L28

Chain u

50S ribosomal protein L15