HL_6VZJ_060

3D structure

PDB id

6VZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

6VZJ|1|a|A|781, 6VZJ|1|a|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VZJ_060 not in the Motif Atlas

Homologous match to HL_5J7L_156

Geometric discrepancy: 0.0805

The information below is about HL_5J7L_156

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

6VZJ|1|a|U|779
6VZJ|1|a|G|780
6VZJ|1|a|A|781
6VZJ|1|a|A|782
6VZJ|1|a|A|783
6VZJ|1|a|G|784
6VZJ|1|a|G|785

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2