HL_6VZJ_061

3D structure

PDB id

6VZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

6VZJ|1|a|U|827, 6VZJ|1|a|G|830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VZJ_061 not in the Motif Atlas

Homologous match to HL_5J7L_157

Geometric discrepancy: 0.0612

The information below is about HL_5J7L_157

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55195.3

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

6VZJ|1|a|U|826
6VZJ|1|a|U|827
6VZJ|1|a|U|828
6VZJ|1|a|A|829
6VZJ|1|a|G|830
6VZJ|1|a|G|831

Current chains

Chain a

23S rRNA

Nearby chains

Chain u

50S ribosomal protein L15