HL_6VZJ_090

3D structure

PDB id

6VZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUGGGCGG

Length

8 nucleotides

Bulged bases

6VZJ|1|a|G|2250

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VZJ_090 not in the Motif Atlas

Homologous match to HL_7RQB_053

Geometric discrepancy: 0.093

The information below is about HL_7RQB_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VZJ|1|a|C|2248
6VZJ|1|a|U|2249
6VZJ|1|a|G|2250
6VZJ|1|a|G|2252
6VZJ|1|a|G|2253
6VZJ|1|a|C|2254
6VZJ|1|a|G|2255
6VZJ|1|a|G|2256

Current chains

Chain a

23S rRNA

Nearby chains

Chain B

Transfer RNA; tRNA

Chain b

50S ribosomal protein L27

Chain v

50S ribosomal protein L16