HL_6VZJ_103

3D structure

PDB id

6VZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6VZJ|1|a|G|2751, 6VZJ|1|a|C|2755

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VZJ_103 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.1115

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.1

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

11

Unit IDs

6VZJ|1|a|C|2745
6VZJ|1|a|U|2746
6VZJ|1|a|G|2747
6VZJ|1|a|A|2748
6VZJ|1|a|A|2749
6VZJ|1|a|A|2750
6VZJ|1|a|G|2751
6VZJ|1|a|C|2752
6VZJ|1|a|A|2753
6VZJ|1|a|U|2754
6VZJ|1|a|C|2755
6VZJ|1|a|U|2756
6VZJ|1|a|A|2757
6VZJ|1|a|A|2758
6VZJ|1|a|G|2759

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L6

Chain q

50S ribosomal protein L36

Chain s

50S ribosomal protein L13