HL_6W2S_003

3D structure

PDB id

6W2S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CUUGGCAUG

Length

9 nucleotides

Bulged bases

6W2S|1|0|U|486, 6W2S|1|0|C|489

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6W2S|1|0|C|484
6W2S|1|0|U|485
6W2S|1|0|U|486
6W2S|1|0|G|487
6W2S|1|0|G|488
6W2S|1|0|C|489
6W2S|1|0|A|490
6W2S|1|0|U|491
6W2S|1|0|G|492

Current chains

Chain 0

CrPV 5'-UTR IRES

Nearby chains

Chain 1

Eukaryotic translation initiation factor 3 subunit A