HL_6W2S_004

3D structure

PDB id

6W2S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CGCUCAGGUACAGUAG

Length

16 nucleotides

Bulged bases

6W2S|1|0|U|539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6W2S|1|0|C|531
6W2S|1|0|G|532
6W2S|1|0|C|533
6W2S|1|0|U|534
6W2S|1|0|C|535
6W2S|1|0|A|536
6W2S|1|0|G|537
6W2S|1|0|G|538
6W2S|1|0|U|539
6W2S|1|0|A|540
6W2S|1|0|C|541
6W2S|1|0|A|542
6W2S|1|0|G|543
6W2S|1|0|U|544
6W2S|1|0|A|545
6W2S|1|0|G|546

Current chains

Chain 0

CrPV 5'-UTR IRES

Nearby chains

Chain 2

Eukaryotic translation initiation factor 3 subunit C

Chain 5

Eukaryotic translation initiation factor 3 subunit H