HL_6W2S_005

3D structure

PDB id

6W2S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

AAAUAUU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W2S_005 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.2507

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6W2S|1|0|A|557
6W2S|1|0|A|558
6W2S|1|0|A|559
6W2S|1|0|U|560
6W2S|1|0|A|561
6W2S|1|0|U|562
6W2S|1|0|U|563

Current chains

Chain 0

CrPV 5'-UTR IRES

Nearby chains

Chain 1

Eukaryotic translation initiation factor 3 subunit A

Chain 2

Eukaryotic translation initiation factor 3 subunit C