HL_6W2S_007

3D structure

PDB id

6W2S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CAACCCUAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W2S_007 not in the Motif Atlas

Geometric match to HL_1GID_008

Geometric discrepancy: 0.3599

The information below is about HL_1GID_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50621.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

6W2S|1|0|C|647
6W2S|1|0|A|648
6W2S|1|0|A|649
6W2S|1|0|C|650
6W2S|1|0|C|651
6W2S|1|0|C|652
6W2S|1|0|U|653
6W2S|1|0|A|654
6W2S|1|0|G|655
6W2S|1|0|G|656

Current chains

Chain 0

CrPV 5'-UTR IRES

Nearby chains