HL_6W2S_014

3D structure

PDB id

6W2S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6W2S|1|A|G|377
6W2S|1|A|U|378
6W2S|1|A|C|379
6W2S|1|A|G|380
6W2S|1|A|C|381
6W2S|1|A|C|382
6W2S|1|A|G|383
6W2S|1|A|U|384
6W2S|1|A|G|385
6W2S|1|A|C|386
6W2S|1|A|C|387

Current chains

Chain A

18S rRNA

Nearby chains

Chain J

eS8

Chain M

uS17