HL_6W2S_022

3D structure

PDB id

6W2S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

6W2S|1|A|G|821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W2S_022 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.1119

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6W2S|1|A|U|820
6W2S|1|A|G|821
6W2S|1|A|U|822
6W2S|1|A|U|823
6W2S|1|A|C|824
6W2S|1|A|A|825
6W2S|1|A|A|826
6W2S|1|A|A|827
6W2S|1|A|G|828

Current chains

Chain A

18S rRNA

Nearby chains

Chain F

eS4

Chain K

uS4

Chain Z

eS24