3D structure

PDB id
6W6K (explore in PDB, NAKB, or RNA 3D Hub)
Description
30S-Activated-high-Mg2+
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
CCCUUGAGG
Length
9 nucleotides
Bulged bases
6W6K|1|A|U|842
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6W6K_018 not in the Motif Atlas
Geometric match to HL_8G9Z_001
Geometric discrepancy: 0.1135
The information below is about HL_8G9Z_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75660.5
Basepair signature
cWW-F
Number of instances in this motif group
19

Unit IDs

6W6K|1|A|C|839
6W6K|1|A|C|840
6W6K|1|A|C|841
6W6K|1|A|U|842
6W6K|1|A|U|843
6W6K|1|A|G|844
6W6K|1|A|A|845
6W6K|1|A|G|846
6W6K|1|A|G|847

Current chains

Chain A
16S rRNA

Nearby chains

Chain R
30S ribosomal protein S18

Coloring options:


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