HL_6W7M_032

3D structure

PDB id

6W7M (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S-Inactive-high-Mg2+ + carbon layer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGGGGAACCU

Length

10 nucleotides

Bulged bases

6W7M|1|A|G|1516

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W7M_032 not in the Motif Atlas

Geometric match to HL_8H1B_001

Geometric discrepancy: 0.2939

The information below is about HL_8H1B_001

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6W7M|1|A|A|1513
6W7M|1|A|G|1514
6W7M|1|A|G|1515
6W7M|1|A|G|1516
6W7M|1|A|G|1517
6W7M|1|A|A|1518
6W7M|1|A|A|1519
6W7M|1|A|C|1520
6W7M|1|A|C|1521
6W7M|1|A|U|1522

Current chains

Chain A

16S rRNA

Nearby chains

Chain K

30S ribosomal protein S11