HL_6WD5_009

3D structure

PDB id

6WD5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCUGGAAAGG

Length

10 nucleotides

Bulged bases

6WD5|1|1|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WD5_009 not in the Motif Atlas

Geometric match to HL_8P9A_222

Geometric discrepancy: 0.324

The information below is about HL_8P9A_222

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

6WD5|1|1|U|304
6WD5|1|1|C|305
6WD5|1|1|U|306
6WD5|1|1|G|307
6WD5|1|1|G|308
6WD5|1|1|A|309
6WD5|1|1|A|310
6WD5|1|1|A|311
6WD5|1|1|G|312
6WD5|1|1|G|313

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain u

50S ribosomal protein L24