HL_6WD7_006

3D structure

PDB id

6WD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

6WD7|1|1|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WD7_006 not in the Motif Atlas

Homologous match to HL_7RQB_006

Geometric discrepancy: 0.1353

The information below is about HL_7RQB_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

6WD7|1|1|G|194
6WD7|1|1|A|195
6WD7|1|1|A|196
6WD7|1|1|A|197
6WD7|1|1|C|198
6WD7|1|1|A|199
6WD7|1|1|U|200
6WD7|1|1|C|201

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 6

Transfer RNA; tRNA

Chain l

50S ribosomal protein L15

Chain x

50S ribosomal protein L28