HL_6WD7_067

3D structure

PDB id

6WD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

6WD7|1|1|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WD7_067 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.1625

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6WD7|1|1|G|2819
6WD7|1|1|A|2820
6WD7|1|1|A|2821
6WD7|1|1|G|2822
6WD7|1|1|A|2823
6WD7|1|1|C|2824
6WD7|1|1|G|2825
6WD7|1|1|A|2826
6WD7|1|1|C|2827

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L3

Chain n

50S ribosomal protein L17