HL_6WD8_012

3D structure

PDB id

6WD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

6WD8|1|1|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WD8_012 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.1601

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6WD8|1|1|G|410
6WD8|1|1|G|411
6WD8|1|1|A|412
6WD8|1|1|C|413
6WD8|1|1|C|414
6WD8|1|1|A|415
6WD8|1|1|U|416
6WD8|1|1|C|417

Current chains

Chain 1

23S ribosomal RNA

Nearby chains