HL_6WD8_064

3D structure

PDB id

6WD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUGCCAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WD8_064 not in the Motif Atlas

Geometric match to HL_3R4F_002

Geometric discrepancy: 0.3311

The information below is about HL_3R4F_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38592.1

Basepair signature

cWW-cWW-F-F

Number of instances in this motif group

2

Unit IDs

6WD8|1|1|A|2700
6WD8|1|1|U|2701
6WD8|1|1|G|2702
6WD8|1|1|C|2703
6WD8|1|1|C|2704
6WD8|1|1|A|2705
6WD8|1|1|A|2706
6WD8|1|1|U|2707

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain n

50S ribosomal protein L17