HL_6WD9_069

3D structure

PDB id

6WD9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAUGCCG

Length

7 nucleotides

Bulged bases

6WD9|1|2|G|41

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WD9_069 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.1991

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

6WD9|1|2|C|38
6WD9|1|2|A|39
6WD9|1|2|U|40
6WD9|1|2|G|41
6WD9|1|2|C|42
6WD9|1|2|C|43
6WD9|1|2|G|44

Current chains

Chain 2

5S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain e

50S ribosomal protein L5

Chain o

50S ribosomal protein L18