HL_6WDA_035

3D structure

PDB id

6WDA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCGACGGUUGUC

Length

12 nucleotides

Bulged bases

6WDA|1|1|A|1453, 6WDA|1|1|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDA_035 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.3525

The information below is about HL_5J7L_200

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6WDA|1|1|G|1450
6WDA|1|1|C|1451
6WDA|1|1|G|1452
6WDA|1|1|A|1453
6WDA|1|1|C|1454
6WDA|1|1|G|1455
6WDA|1|1|G|1456
6WDA|1|1|U|1457
6WDA|1|1|U|1458
6WDA|1|1|G|1459
6WDA|1|1|U|1460
6WDA|1|1|C|1461

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain n

50S ribosomal protein L17