HL_6WDA_109

3D structure

PDB id

6WDA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

6WDA|1|7|U|16, 6WDA|1|7|C|17, 6WDA|1|7|G|18

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDA_109 not in the Motif Atlas

Homologous match to HL_4YCO_001

Geometric discrepancy: 0.3827

The information below is about HL_4YCO_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_66853.7

Basepair signature

cWW-cWS-F-cSH

Number of instances in this motif group

11

Unit IDs

6WDA|1|7|C|13
6WDA|1|7|A|14
6WDA|1|7|G|15
6WDA|1|7|U|16
6WDA|1|7|C|17
6WDA|1|7|G|18
6WDA|1|7|G|19
6WDA|1|7|U|20
6WDA|1|7|A|21
6WDA|1|7|G|22

Current chains

Chain 7

tRNAPhe

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA